WikiPathways is an open, collaborative platform dedicated to the collection and reuse of biological pathways contributed and updated by the research community.

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Search the current collection

Search by gene symbols, pathway names or other keywords

Interact with diagrams with annotated genes, metabolites, drugs, interactions and pathways.

Dedicated to open science

Join hundreds of other scientists by contributing your pathway knowledge.

Create Curate Code

Category filter

Browse the current collection

Explore the full breadth and depth of pathway knowledge. Discover pathways of interest by organism, communities of domain experts, and ontology annotations.

Organism Community Annotation

Browse Table New Updated Cited In

Download and access

Get pathway information in the format you need, including GPML (XML), GMT, SVG, and more. Access our content from your favorite language.

GPML GMT SVG Archive

API SPARQL R Python

Web service API

Download archive

clusterProfiler R package

Example publications

Analyze and Publish

Choose from dozens of online and software tools to perform pathway analysis. Visualize your data in the context of pathway diagrams. Publish results as images with links back to an active and dynamic database.

Analyze

and many more...

Cite Publish Examples

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