wikipathways-collection

WikiPathways WP2882

Summary

Fails

DataNodesTests.dataNodesWithoutIdentifier

The following DataNodes have no identifier: 9

http://www.wikipathways.org/instance/WP2882_rr120815 http://rdf.wikipathways.org/Pathway/WP2882_rr120815/DataNode/c582b (Co-activators
)
http://www.wikipathways.org/instance/WP2882_rr120815 http://rdf.wikipathways.org/Pathway/WP2882_rr120815/DataNode/dc04b (Co-activators
)
http://www.wikipathways.org/instance/WP2882_rr120815 http://rdf.wikipathways.org/Pathway/WP2882_rr120815/DataNode/fc2ec (Ligand)
http://www.wikipathways.org/instance/WP2882_rr120815 http://rdf.wikipathways.org/Pathway/WP2882_rr120815/DataNode/c3b73 (Ligand

)
http://www.wikipathways.org/instance/WP2882_rr120815 http://rdf.wikipathways.org/Pathway/WP2882_rr120815/DataNode/c6ea7 (Ligand

)
http://www.wikipathways.org/instance/WP2882_rr120815 http://rdf.wikipathways.org/Pathway/WP2882_rr120815/DataNode/f425f (Ligand

)
http://www.wikipathways.org/instance/WP2882_rr120815 http://rdf.wikipathways.org/Pathway/WP2882_rr120815/DataNode/dcc47 (Nuclear
receptors)
http://www.wikipathways.org/instance/WP2882_rr120815 http://rdf.wikipathways.org/Pathway/WP2882_rr120815/DataNode/e897e (PPAR alpha ligand)
http://www.wikipathways.org/instance/WP2882_rr120815 http://rdf.wikipathways.org/Pathway/WP2882_rr120815/DataNode/d2f6d (Unknown)

DataNodesTests.unknownTypes

The following DataNodes have Unknown @Type: 5

http://www.wikipathways.org/instance/WP2882_rr120815 http://rdf.wikipathways.org/Pathway/WP2882_rr120815/DataNode/c582b (Co-activators
)
http://www.wikipathways.org/instance/WP2882_rr120815 http://rdf.wikipathways.org/Pathway/WP2882_rr120815/DataNode/dc04b (Co-activators
)
http://www.wikipathways.org/instance/WP2882_rr120815 http://rdf.wikipathways.org/Pathway/WP2882_rr120815/DataNode/fc2ec (Ligand)
http://www.wikipathways.org/instance/WP2882_rr120815 http://rdf.wikipathways.org/Pathway/WP2882_rr120815/DataNode/e897e (PPAR alpha ligand)
http://www.wikipathways.org/instance/WP2882_rr120815 http://rdf.wikipathways.org/Pathway/WP2882_rr120815/DataNode/d2f6d (Unknown)

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 10

http://www.wikipathways.org/instance/WP2882_rr120815 "GR ligand" with graphId ad7a3
http://www.wikipathways.org/instance/WP2882_rr120815 "VDR ligand" with graphId fec41
http://www.wikipathways.org/instance/WP2882_rr120815 "ER ligand" with graphId b8e64
http://www.wikipathways.org/instance/WP2882_rr120815 "LXR ligand" with graphId ed878
http://www.wikipathways.org/instance/WP2882_rr120815 "NRF2 ligand" with graphId b82e2
http://www.wikipathways.org/instance/WP2882_rr120815 "CAR/PXR Ligand" with graphId e0f7e
http://www.wikipathways.org/instance/WP2882_rr120815 "FXR ligand" with graphId e017f
http://www.wikipathways.org/instance/WP2882_rr120815 "AhR Ligand" with graphId bb415
http://www.wikipathways.org/instance/WP2882_rr120815 "FXR Target genes" with graphId c1651
http://www.wikipathways.org/instance/WP2882_rr120815 "Ligand" with graphId fc4af

InteractionTests.possibleTranslocations

Interactions between identical nodes: 14

http://www.wikipathways.org/instance/WP2882_rr120815 http://rdf.wikipathways.org/Pathway/WP2882_rr120815/WP/Interaction/idd3f66ad8 "RXRA" (https://identifiers.org/ensembl/ENSG00000186350) and 
RXRA" (https://identifiers.org/ensembl/ENSG00000186350)
http://www.wikipathways.org/instance/WP2882_rr120815 http://rdf.wikipathways.org/Pathway/WP2882_rr120815/WP/Interaction/idc5581697 "RXRA" (https://identifiers.org/ensembl/ENSG00000186350) and 
RXRA" (https://identifiers.org/ensembl/ENSG00000186350)
http://www.wikipathways.org/instance/WP2882_rr120815 http://rdf.wikipathways.org/Pathway/WP2882_rr120815/WP/Interaction/idc3e30c77 "RXRA" (https://identifiers.org/ensembl/ENSG00000186350) and 
RXRA" (https://identifiers.org/ensembl/ENSG00000186350)
http://www.wikipathways.org/instance/WP2882_rr120815 http://rdf.wikipathways.org/Pathway/WP2882_rr120815/WP/Interaction/id9b3d5fd6 "NR1H3" (https://identifiers.org/ensembl/ENSG00000025434) and 
NR1H3" (https://identifiers.org/ensembl/ENSG00000025434)
http://www.wikipathways.org/instance/WP2882_rr120815 http://rdf.wikipathways.org/Pathway/WP2882_rr120815/WP/Interaction/ide30920ff "NR1I3" (https://identifiers.org/ensembl/ENSG00000143257) and 
NR1I3" (https://identifiers.org/ensembl/ENSG00000143257)
http://www.wikipathways.org/instance/WP2882_rr120815 http://rdf.wikipathways.org/Pathway/WP2882_rr120815/WP/Interaction/id845d8be8 "NR1I3" (https://identifiers.org/ensembl/ENSG00000143257) and 
NR1I3" (https://identifiers.org/ensembl/ENSG00000143257)
http://www.wikipathways.org/instance/WP2882_rr120815 http://rdf.wikipathways.org/Pathway/WP2882_rr120815/WP/Interaction/ide426961c "NFE2L2" (https://identifiers.org/ensembl/ENSG00000116044) and 
NFE2L2" (https://identifiers.org/ensembl/ENSG00000116044)
http://www.wikipathways.org/instance/WP2882_rr120815 http://rdf.wikipathways.org/Pathway/WP2882_rr120815/WP/Interaction/fccd4 "PPARA" (https://identifiers.org/ensembl/ENSG00000186951) and 
PPARA" (https://identifiers.org/ensembl/ENSG00000186951)
http://www.wikipathways.org/instance/WP2882_rr120815 http://rdf.wikipathways.org/Pathway/WP2882_rr120815/WP/Interaction/fa0d4 "PPARA" (https://identifiers.org/ensembl/ENSG00000186951) and 
PPARA" (https://identifiers.org/ensembl/ENSG00000186951)
http://www.wikipathways.org/instance/WP2882_rr120815 http://rdf.wikipathways.org/Pathway/WP2882_rr120815/WP/Interaction/ecd1c "NFE2L2" (https://identifiers.org/ensembl/ENSG00000116044) and 
NFE2L2" (https://identifiers.org/ensembl/ENSG00000116044)
http://www.wikipathways.org/instance/WP2882_rr120815 http://rdf.wikipathways.org/Pathway/WP2882_rr120815/WP/Interaction/idf13776e "RXRA" (https://identifiers.org/ensembl/ENSG00000186350) and 
RXRA" (https://identifiers.org/ensembl/ENSG00000186350)
http://www.wikipathways.org/instance/WP2882_rr120815 http://rdf.wikipathways.org/Pathway/WP2882_rr120815/WP/Interaction/ef334 "SRC" (https://identifiers.org/ensembl/ENSG00000197122) and 
SRC" (https://identifiers.org/ensembl/ENSG00000197122)
http://www.wikipathways.org/instance/WP2882_rr120815 http://rdf.wikipathways.org/Pathway/WP2882_rr120815/WP/Interaction/id996b1555 "NR1H3" (https://identifiers.org/ensembl/ENSG00000025434) and 
NR1H3" (https://identifiers.org/ensembl/ENSG00000025434)
http://www.wikipathways.org/instance/WP2882_rr120815 http://rdf.wikipathways.org/Pathway/WP2882_rr120815/WP/Interaction/ida9df0723 "NR1I2" (https://identifiers.org/ensembl/ENSG00000144852) and 
NR1I2" (https://identifiers.org/ensembl/ENSG00000144852)

More details at https://wikipathways.github.io/WikiPathwaysCurator/InteractionTests/possibleTranslocations