wikipathways-collection

WikiPathways WP478

• WikiPathways: WP478
• Scholia: WP478

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 4 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 4 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 3 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests
  • metaboliteAlsoOtherType: .. all OK!
  • casNumbersNotMarkedAsMetabolite: .. all OK!
  • chemspiderIDsNotMarkedAsMetabolite: .. all OK!
  • HMDBIDsNotMarkedAsMetabolite: .. all OK!
  • KEGGIDsNotMarkedAsMetabolite: .. all OK!
  • metabolitesWithAnEnsembleID: .. all OK!
  • metabolitesWithAnEntrezGeneID: .. all OK!
  • metabolitesWithDbButNoIdentifier: .. all OK!
  • metabolitesWithIdentifierButNoDb: .. all OK!
  • ChEBIIDsNotMarkedAsMetabolite: .. all OK!
  • PubChemIDsNotMarkedAsMetabolite: .. all OK!
  • PubChemSubstanceIDsNotMarkedAsMetabolite: .. all OK!
  • PubChemIDsNotNumbers: .. all OK!
  • PubChemSubstanceIDsNotNumbers: .. all OK!
  • tooManyInChIKeys: .x we found 1 problem(s):
    • Non-zero count of metabolites with more than one InChIKey: 4
• OudatedDataSourcesTests: all 8 tests OK!
• PathwayTests: all 6 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 4 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests
  • keggWithoutMapping: .. all OK!
  • pubchemCIDWithoutMapping: .. all OK!
  • hmdbWithoutMapping: .. all OK!
  • casWithoutMapping: .. all OK!
  • wikDataTypo: .. all OK!
  • duplicateWikidataMappings: .. all OK!
  • wikidataIdentifiersWrong: .. all OK!
  • chemspiderCIDWithoutMapping: .. all OK!
  • lipidMapsWithoutMapping: .. all OK!
  • kNApSAcKWithoutMapping: .. all OK!
  • replaceWikipedia: .. all OK!
  • chebiWithoutMapping_Reactome: .. all OK!
  • chebiWithoutMapping: .x we found 1 problem(s):
    • ChEBI identifiers without Wikidata mappings: 1
  • hmdbWithoutMapping: .. all OK!
  • retiredIdentifiers: .. all OK!

Summary

• Number of test classes: 20
• Number of tests: 105
• Number of assertions: 210
• Number of fails: 2

Fails

MetabolitesTests.tooManyInChIKeys

Non-zero count of metabolites with more than one InChIKey: 4

http://www.wikipathways.org/instance/WP478_rr117297 (example) has: maltose 69-79-4 with InChIKeys: GUBGYTABKSRVRQ-DKBJLJRDSA-N, DKXNBNKWCZZMJT-WUJBLJFYSA-N, GUBGYTABKSRVRQ-NVKTZKGVNA-N, GUBGYTABKSRVRQ-PICCSMPSSA-N
http://www.wikipathways.org/instance/WP478_rr117297 (example) has: maltotriose 1109-28-0 with InChIKeys: RXVWSYJTUUKTEA-CGQAXDJHSA-N, FYGDTMLNYKFZSV-DZOUCCHMSA-N
http://www.wikipathways.org/instance/WP478_rr117297 (example) has: phosphate 14265-44-2 with InChIKeys: NBIIXXVUZAFLBC-UHFFFAOYSA-N, NBIIXXVUZAFLBC-UHFFFAOYSA-K
http://www.wikipathways.org/instance/WP478_rr117297 (example) has: maltodextrin 9050-36-6 with InChIKeys: GUBGYTABKSRVRQ-ASMJPISFSA-N, FYGDTMLNYKFZSV-MRCIVHHJSA-N

WikidataTests.chebiWithoutMapping

ChEBI identifiers without Wikidata mappings: 1

https://identifiers.org/chebi/CHEBI:24384 (glycogens) does not have a Wikidata mapping in http://www.wikipathways.org/instance/WP478_rr117297 ;